You can disable a plot object using the ChartObjEnable property. See question #4 in the FAQ's, http://www.quinn-curtis.com/QCChart2DCFFAQs.htm.
Using the objects in the ScrollApplication1 example program:
ChartAttribute attrib1 = new ChartAttribute (Color.Yellow, 3,DashStyle.Solid);
SimpleLinePlot lineplot1 = new SimpleLinePlot(pTransform1, null, attrib1);
lineplot1.SetFastClipMode( ChartObj.FASTCLIP_X);
RTSimpleSingleValuePlot solarPanelLinePlot1 = new RTSimpleSingleValuePlot(pTransform1,lineplot1, currentTemperature1);
chartVu.AddChartObject(solarPanelLinePlot1);
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// Disable - hide - the plot at some point
solarPanelLinePlot1.ChartObjEnable = ChartObj.OBJECT_DISABLE;.
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// Enable - show - the plot at some point
solarPanelLinePlot1.ChartObjEnable = ChartObj.OBJECT_ENABLE;